[2025-04-01 10:24:35] INFO: GTDB Release Tk v0.0.8
[2025-04-01 10:24:35] INFO: gtdb_release_tk ssu_files data_from_db/gtdb_r226_metadata_20250401_post_propagate.tsv sp_cluster_file/sp_clusters_r226.tsv data_from_db/gtdb_r226_genome_paths_20250401.tsv 226 ssu_files
[2025-04-01 10:24:35] INFO: Parsing representative genomes from GTDB metadata.
[2025-04-01 10:24:41] INFO:  ...identified 136,646 bacterial and 6,968 archaeal representative genomes.
[2025-04-01 10:24:41] INFO: Parsing all species clusters from GTDB metadata.
[2025-04-01 10:24:42] INFO:  ...identified 143,614 representative genomes spanning 732,475 genomes.
[2025-04-01 10:24:42] INFO: Parsing path to data directory for each genome.
[2025-04-01 10:24:43] INFO: Identifying SSU sequence for each representative genome.
[2025-04-01 11:42:38] INFO: Filtered 0 SSU sequence based on rRNA gene length.
[2025-04-01 11:42:38] INFO: Filtered 0 SSU sequence based on contig length.
[2025-04-01 11:42:38] INFO: Filtered 114,863 SSU sequence based on a maximum allowed length of 3800 bp.
[2025-04-01 11:42:38] INFO: Identified 77,310 genomes with a valid SSU sequence.
[2025-04-01 11:42:38] INFO: Creating FASTA file containing all identified SSU sequences.
[2025-04-01 19:09:03] INFO: Done.