[2021-11-01 00:57:37] INFO: GenomeTreeTk v0.1.8 [2021-11-01 00:57:37] INFO: genometreetk bootstrap gtdb_r207_bac120_fasttree.tree ./msa/gtdb_r207_bac120_concatenated.faa bootstraps -c 7 [2021-11-01 00:57:38] INFO: Calculating bootstrap replicates: [2021-11-01 01:00:32] INFO: GenomeTreeTk v0.1.8 [2021-11-01 01:00:32] INFO: genometreetk bootstrap gtdb_r207_bac120_fasttree.tree ./msa/gtdb_r207_bac120_concatenated.faa bootstraps -c 3 [2021-11-01 01:00:33] INFO: Calculating bootstrap replicates: [2021-11-01 01:00:33] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_0.fna as it already exists. [2021-11-01 01:00:33] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_1.fna as it already exists. [2021-11-01 01:00:33] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_2.fna as it already exists. [2021-11-01 01:00:33] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_3.fna as it already exists. [2021-11-01 01:00:33] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_4.fna as it already exists. [2021-11-01 01:00:33] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_5.fna as it already exists. [2021-11-01 01:00:33] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_6.fna as it already exists. [2021-11-01 11:29:43] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_7.fna as it already exists. [2021-11-01 11:29:43] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_8.fna as it already exists. [2021-11-01 11:29:43] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_9.fna as it already exists. [2021-11-01 16:59:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_10.fna as it already exists. [2021-11-01 16:59:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_11.fna as it already exists. [2021-11-01 16:59:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_12.fna as it already exists. [2021-11-01 16:59:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_13.fna as it already exists. [2021-11-01 16:59:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_14.fna as it already exists. [2021-11-01 16:59:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_15.fna as it already exists. [2021-11-01 16:59:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_16.fna as it already exists. [2021-11-01 22:07:17] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_17.fna as it already exists. [2021-11-01 22:07:17] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_18.fna as it already exists. [2021-11-01 22:07:17] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_19.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_20.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_21.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_22.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_23.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_24.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_25.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_26.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_27.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_28.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_29.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_30.fna as it already exists. [2021-11-02 08:54:38] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_31.fna as it already exists. [2021-11-02 08:55:49] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_32.fna as it already exists. [2021-11-02 08:56:44] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_33.fna as it already exists. [2021-11-03 00:49:51] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_36.fna as it already exists. [2021-11-03 00:49:51] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_37.fna as it already exists. [2021-11-03 00:49:51] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_38.fna as it already exists. [2021-11-03 00:49:51] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_39.fna as it already exists. [2021-11-03 00:49:51] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_40.fna as it already exists. [2021-11-03 00:49:51] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_41.fna as it already exists. [2021-11-03 00:49:51] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_42.fna as it already exists. [2021-11-03 16:46:45] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_46.fna as it already exists. [2021-11-03 16:46:45] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_47.fna as it already exists. [2021-11-03 16:46:45] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_48.fna as it already exists. [2021-11-03 16:46:45] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_49.fna as it already exists. [2021-11-03 16:46:45] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_50.fna as it already exists. [2021-11-03 16:46:45] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_51.fna as it already exists. [2021-11-03 16:46:45] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_52.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_56.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_57.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_58.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_59.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_60.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_61.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_62.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_63.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_64.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_65.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_66.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_67.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_68.fna as it already exists. [2021-11-04 08:44:40] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_69.fna as it already exists. [2021-11-05 00:40:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_73.fna as it already exists. [2021-11-05 00:40:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_74.fna as it already exists. [2021-11-05 00:40:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_75.fna as it already exists. [2021-11-05 00:40:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_76.fna as it already exists. [2021-11-05 00:40:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_77.fna as it already exists. [2021-11-05 00:40:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_78.fna as it already exists. [2021-11-05 00:40:15] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_79.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_83.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_84.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_85.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_86.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_87.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_88.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_89.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_90.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_91.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_92.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_93.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_94.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_95.fna as it already exists. [2021-11-05 17:14:27] WARNING: Skipping bootstraps/replicates/bootstrap_msa.r_96.fna as it already exists. [2021-11-06 09:34:58] INFO: Calculating bootstrap support values. [2021-11-06 11:29:45] INFO: Bootstrapped tree written to: bootstraps/gtdb_r207_bac120_fasttree.bootstrap.tree