This directory contains datasets for the 7,903 UBA MAGs described in:

Parks DH, et al. 2017. Recovery of nearly 8,000 metagenome-assembled genomes 
  substantially expands the tree of life. Nat Microbiol, 
  doi:10.1038/s41564-017-0012-7/
  
https://www.nature.com/articles/s41564-017-0012-7

uba_ar_genomes.tar.gz: The 623 archaeal UBA genomes. These genomes have been
                       submitted to NCBI and should appear in INSDC repositories
                       shortly.

uba_bac_genomes.tar.gz: The 7,280 bacterial UBA genomes. These genomes have been
                       submitted to NCBI and should appear in INSDC repositories

uba_assemblies.tar.gz: CLC assemblies of the 1,550 SRA metagenomes 
                       along with coverage information.
uba_assemblies.part-*: Same as above, split into files of 10GB.
                       
uba_ar_prokka.tar.gz: Gene prediction and annotation for the 623 archaeal genomes
                      using Prokka v1.12 with Pfam v31 and UniProt databases created
                      on April 17, 2017 according to the Prokka instructions.
                      
uba_bac_prokka.tar.gz: Gene prediction and annotation for the 7,280 bacterial genomes
                       using Prokka v1.12 with Pfam v31 and UniProt databases created
                       on April 17, 2017 according to the Prokka instructions.
uba_bac_prokka.part-*: Same as above, split into files of 10GB.

uba_ssu.tar.gz: 16S sequences identified in the 7,903 UBA genomes using the 'ssu_finder'
                feature of CheckM.

The files provided as multiple parts can be uncompressed using:
> cat uba_bac_prokka.part-* | tar xz
                       
If you make use of the Prokka annotations please cite:
Seemann T. 2014. Prokka: rapid prokaryotic genome annotation
  Bioinformatics, 30, 2068-9.